It does have a fuel filter, it is located to the right of the battery. Go to this site: http://www.hondahookup.com/manuals/ sign up and download the repair manual free. It will explain how to replace it.
Previous answers:
"According to my Honda Dealer and American Honda Co. the 2000 Honda Civic does not have a fuel filter, it has a "strainer" located inside the fuel tank before the fuel enters the Fuel Pump."
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