Does calling God your father break the commandment Honor your Father and Mother?

No it doesn't. Jehovah God is the 1 who created that exact Law and had it recorded for our benefit. (2 Peter 1:20-21) Calling Jehovah "Father" is a sign of acknowledging Him as the Creator of all humanity and everything else. (Isaiah 64:8) It also shows respect and closeness, something that Jehovah welcomes from those that seek to have a relationship with Him. (James 4:8) The term "Father" also denotes familial closeness, since those that become followers of Jehovah are viewed as His "sons" and daughters. (Romans 8:15; Matthew 5:44)

(New World Translation of the Holy Scriptures; Insight on the Scriptures Volume 1, pg.814)